Skip to content
Apex Shield Roofing logo
Newly installed gray shingle roof on an Alameda home with a visible vent pipe and chimney

Roof Repair

Why Your Fairly New Roof Is Already Leaking

  • 4.9 stars from 60 Google reviews
  • Free written estimates
  • Photo updates by text and email
  • Office on Webster St, Alameda

By Apex Shield Roofing · Published November 3, 2026 · Updated November 3, 2026

Why would a new roof leak?

A new roof leaks because of an installation fault, not age. The usual faults sit at flashing, vent boots, valleys and nailing, plus decking problems that were not caught at tear-off. A properly installed shingle field rarely fails in the first few years, so a leak this early almost always traces to a detail. That is good news: a detail fix is smaller than a new roof.

Report the leak to the installer in writing, with photos, as soon as you see it. Everything after that depends on a record of when it started.

What installation faults cause early leaks?

These are the faults we look for first on a young roof:

  • Old flashing reused at a wall, chimney or skylight instead of replaced
  • Step flashing missed or not woven in with each shingle course
  • Nails driven too high, exposing the nail heads, or driven crooked so the shingle cannot seal
  • Vent pipe boots left old, or sealed with caulk only
  • Underlayment not lapped correctly at valleys and eaves
  • Drip edge omitted or installed in the wrong order with the underlayment
  • Ridge or hip caps nailed poorly
  • Damaged or aged decking left under new shingles

Some of these are visible from the ground with binoculars, such as lifted tabs and bright nail heads. Others, like missing step flashing, only show when shingles are lifted. A skylight that starts leaking right after a reroof is a classic case of old flashing left in place.

Roofer lifting shingles at a stucco wall to inspect step flashing after a leak call
A roofer lifts shingles along a stucco wall to inspect whether step flashing was woven in with each course.

Which fault shows up where?

Each installation fault leaves a different trace, and knowing the trace shortens the call to the installer. Use this as a quick read of your own roof:

FaultWhere it showsWho can spot it
Reused or missing step flashingStain on a wall or ceiling beside a sidewallRoofer, after lifting shingles
Exposed or high nailsBright dots in a shingle rowYou, from the ground with binoculars
Old vent boot left in placeStain near a plumbing vent, worse over timeRoofer or you in the attic
Missing or misplaced drip edgeWater marks on fascia, rot at the eaveRoofer, at the roof edge
Poor valley underlaymentStreak below a valleyRoofer, in the attic or on the roof

Rules back this up. A City of Santa Clara building bulletin summarizing the California Residential Code says asphalt shingles go on wood structural panel or solid lumber sheathing, and that a drip edge at the eaves and rakes extends a quarter inch below the sheathing and at least two inches back onto the deck. The inspector at your final inspection should see those details, so ask what was checked.

Is it a leak from the new roof or something else?

Confirm the roof is the source before you call. Condensation in the attic, a failed skylight seal, an overflowing gutter or a bath fan venting into the attic can all stain a ceiling. A water pattern that tracks rain points to the roof. A stain that appears on cold, dry mornings points to moisture inside the house.

Roofs on new-construction houses can leak for the same reasons, and also because other trades cut holes after the roof is done. A plumber or an HVAC installer who adds a vent after final roofing leaves a penetration someone has to flash.

What does a workmanship warranty cover?

A workmanship warranty covers the contractor's installation work. A manufacturer warranty covers the shingles themselves, and manufacturers such as GAF and CertainTeed publish their own terms. The two are separate documents with different claim paths, and neither is a promise of how long your roof lasts.

We do not quote warranty terms in a blog post. The terms go in your contract in writing; ask us before you sign, and ask any roofer the same. Check four things: how long the workmanship warranty runs, what it excludes, whether it passes to a new owner, and who you call.

Customers on Alameda jobs have reported receiving warranty details and paperwork, and one had a loose shingle replaced under the workmanship warranty after strong wind.

Close view of exposed nail heads and a misaligned shingle row on a new roof
Exposed nail heads in a shingle row where fasteners were driven too high on the shingle.

How to get a leaking new roof fixed

  1. Document it. Photos of the stain, the attic and any exterior clues, with dates.
  2. Notify in writing. Email or text the contractor with the location and a request for an inspection.
  3. Give a fair repair window. Let the contractor inspect and fix it under the warranty.
  4. Keep the contract and paperwork together. Warranty terms, change orders, invoices.
  5. Escalate if needed. The CSLB handles complaints about poor workmanship, with time limits set by statute: four years for defects visible on reasonable inspection, ten years for hidden structural ones, according to Business and Professions Code section 7091.

Not legal advice; check the CSLB's current process before you file.

What does a roofer check on a young roof?

A roofer starts with the water path, then works back toward the oldest-looking detail. On a roof less than a few years old, the field of shingles is rarely the problem, so the visit is mostly a detail audit.

  1. Photograph the interior stain and mark the wet zone in the attic
  2. Check every penetration uphill from that zone, including vents, pipes and skylights
  3. Lift the shingles along walls to see whether step flashing sits under each course
  4. Look at nail placement and sealant strips on the nearest courses
  5. Check eave edges for drip edge and underlayment order
  6. Probe the deck from the attic for soft or stained wood

The trade-off is repair against re-do. Re-flashing one wall or resetting a vent boot is a small, fast fix. If the same fault repeats across the roof, such as high nailing on every course, the honest advice may be to redo a section. On one Alameda job, a change order for aged decking was explained before work continued, which is how unexpected findings should be handled.

Roofer checking the attic underside of a recently reroofed deck for fresh water marks
A roofer checks the underside of a recently replaced roof deck in the attic for fresh water marks around a vent pipe.

What should a leak repair report include?

Ask the installer for a short written report after the visit. It does not need to be long, but it should answer six questions:

  • Where did the water enter, with a photo of the spot?
  • What was the cause: flashing, nailing, boot, underlayment or something else?
  • What was replaced or reset, and with which parts?
  • Was the repair water-tested, and how?
  • Does the repair fall under the workmanship terms in your contract?
  • What should you watch for after the next rain?

Some installers say a new roof needs a few rains to settle. Treat that with caution. A correctly built roof sheds water from the first storm, and a leak in the first season is a reason to ask for an inspection, not to wait.

If the same spot leaks again after a repair, say so in writing and ask for a second look from a different person. A repeat leak at the same place usually means the cause was missed, not that the roof is cursed.

When a new roof needs a second opinion

Sometimes the first contractor will not return, or the repair does not hold. We have taken over after a past contractor would not return, and we have finished a roof where a previous crew left only underlayment and a leak, which took a couple of days. A skylight that leaks after another roofer's reroof is a common second-opinion call.

A second roofer can document faults, but whether a prior contractor owes repairs is between you and them. If you are comparing roofs for leak repair or general roof repair, ask for the findings in writing so you have them for the warranty claim.

For Alameda homeowners, start here to see how we handle inspections and written estimates.

Call the office and describe what the roof is doing; a free inspection will tell you whether it is a detail fix or something bigger.

Sources

About the author

Apex Shield Roofing is a roofing company on Webster St in Alameda. Our guides draw on the jobs our crews see on Bay Area roofs and on published rules from the agencies cited.

More questions on this topic

Is a leak after a new roof covered by warranty?

Often yes, if the cause is installation workmanship rather than storm damage or later changes to the house. Terms differ between contractors and manufacturers, so find the workmanship section of your contract and read it. The terms go in your contract in writing, and you should ask before you sign what it covers and for how long.

How soon should a new roof leak be reported?

Right away, in writing, with photos. Delay lets water soak insulation and framing and gives the contractor an argument about whether the damage grew. Send the date, location, and photos by text or email so there is a record, and ask for an inspection date.

Can I file a complaint with the state about a bad roof job?

Yes. The Contractors State License Board takes complaints about poor workmanship. Under Business and Professions Code section 7091 the filing windows are four years for obvious defects and ten years for hidden structural ones. Try the contractor's repair process first and keep your records, then check the CSLB's current rules before filing.

Does a leaking new roof affect the manufacturer warranty?

It can, because manufacturer warranties generally depend on the product being installed to the maker's written instructions. A flashing or nailing fault is both a workmanship problem and a possible warranty issue. Read the installation conditions in your manufacturer paperwork, and ask the installer to put the cause of the leak in writing.

Related services

Where we work

Want a roofer's opinion on your roof?

The phone is the fast way. If the water is coming in now, call first and use the form later.

  • 4.9 stars from 60 Google reviews
  • Free written estimates
  • Photo updates by text and email
  • Office on Webster St, Alameda
Call NowQuote